It looks like the issue was our mail server. We are using Mailgun SMTP service for our mail sending and this offers a tracking feature.
This tracking feature adds a invisible image to the html code in order to get request for stats. If I deactivate this feature, the HTML_IMAGE_ONLY_12 error is gone and the mail are no longer marked as SPAM. We don't have any issues with our other applications because sent emails are bigger in text content.